Quantitative Biology
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Table of Contents
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Links to some pages being used for the University of Auckland's BIOSCI220: Quantitative Biology course.
Basic Introduction to R
Lab 4: Basics of model-based inference
Lab 5: The SIR model of epidemics, and simulation/forcasting under this model
Lab 6: Model-based inference with the SIR model
Example AIC weights table for SIR models fit to the New Zealand Ministry of Health active case data
(I believe this is confirmed + suspected cases)
Google Sheet: https://docs.google.com/spreadsheets/d/1WNk1la1TfoIdKcadxm0kUW5JNTTl0ZDImzDEQq0fdSQ/edit?usp=sharing
Example AIC weights table for SIR models fit to the EUDC active case data for New Zealand
(I think this may be just confirmed cases)
NOTE: The exact results you get may depend on the day you access the EUDC data, as it keeps getting updated!
Google Sheet: https://docs.google.com/spreadsheets/d/1g6rTd0O2Ec48AdR6-_B7N5-BjGtMEI1n2bvNCnmY8co/edit?usp=sharing
| File name | File type | Size | |
|---|---|---|---|
| 2020-08-03_owid-covid-data.csv | CSV text | 5.91 MB | Info |
| 2021-01-28_owid-covid-data.csv | CSV text | 14.31 MB | Info |
| 2022-10-07_owid-covid-data.csv | CSV text | 59.83 MB | Info |
| Week6_AIC_with_SIRs_fit_to_NZ_EUDC_data.xlsx | No description | 49.24 kB | Info |
| Week6_AIC_with_SIRs_fit_to_NZ_Ministry_of_Health_data.xlsx | No description | 48.27 kB | Info |