Starting Resources
Mailing lists:
RIB -- R listserv for Integrative Biology (ecology/evolution/stats with R)
IB200b listserv for those taking or auditing the course Spring 2011
Labs
Introduction to Statistical Thinking (all)
Lab 1: Introduction to Mesquite; Discrete character reconstruction
Lab #2: Phylogenetic Conservatism and Correlation of Discrete Characters (Matzke)
Lab #3: Introduction to R (Matzke)
Lab #4: Intro to R continued: Phylogenies; Continuous characters (Matzke)
Lab #5: Phylogenetically independent contrasts (R) (Matzke)
Lab #6: Morphometrics applications (Matzke)
Lab #7: Testing molecular clock, r8s, BEAST (Matzke)
Lab #8: Analysis of molecular evolution; substitution models, Modeltest, etc. (Matzke)
Lab #9: Tools for comparative genomics; BLAST, etc. (Matzke)
Lab #10: Tools for evo-devo (Matzke)
Lab #11: Generating random trees; testing cladogram imbalance (Matzke)
Lab #12: Lineages through time; diversification analyses (Matzke)
Lab #13: Coalescence theory; applications in population genetics and phylogeography (Matzke)
Lab #14: Consensus methods; Brooks parsimony (Matzke)
Lab #15: Biogeographic software; DIVA, Lagrange (Matzke)
Lab #16: Community phylogenetics with phylocom, picante (Matzke)