txt0 = "================================================================" txt00 = "START OF IMPORTANT UPDATE FROM PHYLOWIKI" txt0 = "================================================================" txt1 = "You are attempting to source() BioGeoBEARS patch code from PhyloWiki." txt2 = "All code updates are now hosted at GitHub. This means you can install the updated BioGeoBEARS from GitHub ( https://github.com/nmatzke/BioGeoBEARS ), and you do not have to keep re-running source() commands." txt3 = "To install BioGeoBEARS from GitHub, follow these steps:" txt4 = " # 1. Install the new rexpokit, version 0.26.6 from CRAN: install.packages('rexpokit') # 2. Install the new cladoRcpp version 0.15 from CRAN: install.packages('cladoRcpp') # 3. Install devtools from CRAN: install.packages('devtools') # 4. Install the updated BioGeoBEARS from GitHub, install with: library(devtools) devtools::install_github(repo='nmatzke/BioGeoBEARS') # 5. Finally, run library() on these packages: library(rexpokit) library(cladoRcpp) library(BioGeoBEARS) # Note 1: The GitHub version does not yet have the documentation updated - for # now, please search Google and/or the BioGeoBEARS Google Group for help. # Note 2: As of late September, the new optimx package doesn't seem to work # with BioGeoBEARS. For now, set # BioGeoBEARS_run_object$use_optimx = 'GenSA' # ...in your scripts. # Note 3: If you experience errors or problems with installation, please # search the BioGeoBEARS Google Group, and/or join and post a # question there: https://groups.google.com/forum/#!forum/biogeobears " txt0 = "================================================================" txt5 = "END OF IMPORTANT UPDATE FROM PHYLOWIKI" txt0 = "================================================================" cat("\n") cat(txt0) cat("\n") cat(txt00) cat("\n") cat(txt0) cat("\n") cat(txt1) cat("\n") cat("\n") cat(txt2) cat("\n") cat("\n") cat(txt3) cat("\n") cat(txt4) cat(txt0) cat("\n") cat(txt5) cat("\n") cat(txt0) cat("\n")