Publications using BioGeoBEARS

At the June 2014 SMBE meeting, I ran into Rebecca Harris, who mentioned that her paper using BioGeoBEARS had been published. This encouraged me to look for other such publications. There are already at least four (as of June 16, 2014). I will add more as I become aware of them.

Updates:
Jan. 1, 2015: 14 usages
May 1, 2015: There are now 29.
October 1, 2015: 47
September 12, 2016: 155 (approximate; there are 412 hits on Google Scholar, but many of these are CRAN pages. Eliminating those and obvious reviews etc., I get about 155 hits; Matzke 2014 has 113 citations and was finally accepted 1 year after BioGeoBEARS was available on CRAN, so this seems about right)

See also

Link to date-ordered Google Scholar search on papers using BioGeoBEARS

Publications using BioGeoBEARS

(link to this section)

  1. Fonseca, Luiz Henrique Martins; Lohmann, Lúcia G. (2015). Biogeography and evolution of Dolichandra (Bignonieae, Bignoniaceae). Botanical Journal of the Linnean Society, 179(2). September 17, 2015. http://dx.doi.org/10.1111/boj.12338 http://onlinelibrary.wiley.com/doi/10.1111/boj.12338/full
  2. Rando, Juliana Gastaldello (2015). Phylogenetic studies, taxonomic and biogeographic on Chamaecrista, Leguminosae. Ph.D. thesis, Institute of Biosciences, USP, Brazil. http://www.teses.usp.br/teses/disponiveis/41/41132/tde-06032015-093505/en.php
  3. # Massana, Kathryn A.; Beaulieu, Jeremy M.; Matzke, Nicholas J.; O'Meara, Brian C. (2015). Non-null Effects of the Null Range in Biogeographic Models: Exploring Parameter Estimation in the DEC Model, bioRxiv. September 16, 2015. http://dx.doi.org/10.1101/026914 http://biorxiv.org/content/early/2015/09/16/026914.abstract
  4. Araujo, Daniela Petrim (2015). Historical biogeography of pit vipers of the Bothrops alternatus group (Serpentes, Viperidae). 2015 54 f. Dissertation (Master) - Universidade Estadual Paulista Julio de Mesquita Filho, Institute of Biosciences, Arts and Exact Sciences. http://repositorio.unesp.br/handle/11449/127755
  5. Shaw, A. Jonathan; Shaw, Blanka; Johnson, Matthew G.; Devos, Nicolas; Stenøien, Hans K.; Flatberg, Kjell I.; Carter, Benjamin E. (2015). Phylogenetic structure and biogeography of the Pacific Rim clade of Sphagnum subgen. Subsecunda: haploid and allodiploid taxa. Biological Journal of the Linnean Society, 116(2), 295–311. October 2015. http://dx.doi.org/10.1111/bij.12586 http://onlinelibrary.wiley.com/doi/10.1111/bij.12586/abstract
  6. Duchêne, David A.; Cardillo, Marcel (2015). Phylogenetic patterns in the geographic distributions of birds support the tropical conservatism hypothesis. Global Ecology and Biogeography, Early View. http://onlinelibrary.wiley.com/doi/10.1111/geb.12370/full http://dx.doi.org/10.1111/geb.12370
  7. Tagliacollo, Victor A.; Duke-Sylvester, Scott M.; Matamoros, Wilfredo A.; Chakrabarty, Prosanta; Albert, James S. (2015). Coordinated Dispersal and Pre-Isthmian Assembly of the Central American Ichthyofauna. Systematic Biology. September 14, 2015. http://sysbio.oxfordjournals.org/content/early/2015/09/13/sysbio.syv064.short http://dx.doi.org/10.1093/sysbio/syv064
  8. Economo, Evan P.; Sarnat, Eli M.; Janda, Milan; Clouse, Ronald; Klimov, Pavel B.; Fischer, Georg; Blanchard, Benjamin D.; Ramirez, Lizette N.; Andersen, Alan N.; Berman, Maia; Guénard, Benoit; Lucky, Andrea; Rabeling, Christian; Wilson, Edward O.; Knowles, L. Lacey (2015). Breaking out of biogeographical modules: range expansion and taxon cycles in the hyperdiverse ant genus Pheidole. Journal of Biogeography. September 1, 2015. http://dx.doi.org/10.1111/jbi.12592 http://onlinelibrary.wiley.com/doi/10.1111/jbi.12592/full
  9. Merckx, Vincent S. F. T.; Kasper P. Hendriks; Kevin K. Beentjes; Constantijn B. Mennes; Leontine E. Becking; Katja T. C. A. Peijnenburg; Aqilah Afendy; Nivaarani Arumugam; Hugo de Boer; Alim Biun; Matsain M. Buang; Ping-Ping Chen; Arthur Y. C. Chung; Rory Dow; Frida A. A. Feijen; Hans Feijen; Cobi Feijen-van Soest; Jozsef Geml; Rene Geurts; Barbara Gravendeel; Peter Hovenkamp; Paul Imbun; Isa Ipor; Steven B. Janssens; Merlijn Jocque; Heike Kappes; Eyen Khoo; Peter Koomen; Frederic Lens; Richard J. Majapun; Luis N. Morgado; Suman Neupane; Nico Nieser; Joan T. Pereira; Homathevi Rahman; Suzana Sabran; Anati Sawang; Rachel M. Schwallier; Phyau-Soon Shim; Harry Smit; Nicolien Sol; Maipul Spait; Michael Stech; Frank Stokvis; John B. Sugau; Monica Suleiman; Sukaibin Sumail; Daniel C. Thomas; Jan van Tol; Fred Y. Y. Tuh; Bakhtiar E. Yahya; Jamili Nais; Rimi Repin; Maklarin Lakim; Menno Schilthuizen (2015). Evolution of endemism on a young tropical mountain. Nature, 524, 347-350. http://www.nature.com/nature/journal/v524/n7565/abs/nature14949.html http://dx.doi.org/10.1038/nature14949
  10. Mabry, Makenzie E. (2015). Evaluating the Monophyly and Biogeography of Cryptantha (Boraginaceae). Master's Thesis, San Diego State University. Summer 2015. http://sdsu-dspace.calstate.edu/bitstream/handle/10211.3/143523/Mabry_sdsu_0220N_10814.pdf?sequence=1
  11. Espeland, Marianne; Jason P.W. Hall; Philip J. DeVries; David C. Lees; Mark Cornwall; Yu-Feng Hsu; Li-Wei Wu; Dana L. Campbell; Gerard Talavera; Roger Vila; Shayla Salzman; Sophie Ruehr; David J. Lohman; Naomi E. Pierce (2015). Ancient Neotropical origin and recent recolonisation: Phylogeny, biogeography and diversification of the Riodinidae (Lepidoptera: Papilionoidea). Molecular Phylogenetics and Evolution, 93, 296–306. December 2015. http://www.sciencedirect.com/science/article/pii/S1055790315002377 http://dx.doi.org/10.1016/j.ympev.2015.08.006
  12. Toussaint, Emmanuel F. A.; Tänzler, Rene; Rahmadi, Cahyo; Balke, Michael; Riedel, Alexander (2015). Biogeography of Australasian flightless weevils (Curculionidae, Celeuthetini) suggests permeability of Lydekker's and Wallace's Lines. Zoologica Scripta. July 14, 2015. http://dx.doi.org/10.1111/zsc.12127 http://onlinelibrary.wiley.com/doi/10.1111/zsc.12127/full
  13. Condamine, Fabien L.; Toussaint, Emmanuel F. A.; Clamens, Anne-Laure; Genson, Gwenaelle; Sperling, Felix A. H.; Kergoat, Gael J. (2015). Deciphering the evolution of birdwing butterflies 150 years after Alfred Russel Wallace. Scientific Reports, 5, 11860. http://dx.doi.org/10.1038/srep11860 http://www.nature.com/articles/srep11860
  14. Sukumaran, Jeet; Economo, Evan P.; Knowles, L. Lacey (2015). Machine Learning Biogeographic Processes from Biotic Patterns: A New Trait-Dependent Dispersal and Diversification Model with Model-Choice By Simulation-Trained Discriminant Analysis. bioRxiv, June 22, 2015. http://biorxiv.org/content/early/2015/06/22/021303.short http://dx.doi.org/10.1101/021303
  15. Lam, Adriane; Stigall, Alycia L. (2015). Biogeographic origins and dispersal pathways of invasive taxa: the Late Ordovician (Katian) Richmondian Invasion, Cincinnati area, Ohio. Conference paper: 12th International Symposium on the Ordovician System, at Harrisonburg, VA. http://www.researchgate.net/publication/278032529
  16. Thacker, Christine E. (2015). Biogeography of goby lineages (Gobiiformes: Gobioidei): origin, invasions and extinction throughout the Cenozoic. Journal of Biogeography, 42(9), 1615-1625. September 2015. http://dx.doi.org/10.1111/jbi.12545 http://onlinelibrary.wiley.com/doi/10.1111/jbi.12545/full
  17. Hosner, Peter A.; Braun, Edward L.; Kimball, Rebecca T. (2015). Land connectivity changes and global cooling shaped the colonization history and diversification of New World quail (Aves: Galliformes: Odontophoridae). Journal of Biogeography, 42(10), 1883–1895. October 2015. http://onlinelibrary.wiley.com/doi/10.1111/jbi.12555/full http://dx.doi.org/10.1111/jbi.12555
  18. Lam, Adriane R. (2015). Paleobiogeographic Analyses of Late Ordovician Faunal Migrations: Assessing Regional and Continental Pathways and Mechanisms. Master's Thesis, Department of Geological Sciences, Ohio University, 1-322. https://etd.ohiolink.edu/!etd.send_file?accession=ohiou1428515661&disposition=inline
  19. Pavan, Ana Carolina D'Oliveira (2014). Systematics and evolutionary history of the neotropical bats Pteronotus (Chiroptera: Mormoopidae). Instituto de Biociências, São Paulo. December 11, 2014. http://www.teses.usp.br/teses/disponiveis/41/41131/tde-19032015-094823/en.php
  20. Schweizer, Manuel; Wright, Timothy F.; Peñalba, Joshua V.; Schirtzinger, Erin E.; Joseph, Leo (2015). Molecular phylogenetics suggests a New Guinean origin and frequent episodes of founder-event speciation in the nectarivorous lories and lorikeets (Aves: Psittaciformes). Molecular Phylogenetics and Evolution. April 28, 2015. http://dx.doi.org/10.1016/j.ympev.2015.04.021 http://www.sciencedirect.com/science/article/pii/S1055790315001232
  21. Kergoat, Gael J.; Le Ru, Bruno P.; Sadeghi, Seyed E.; Tuda, Midori; Reid, Chris A.M.; György, Zoltán; Genson, Gwenaëlle; Ribeiro-Costa, Cibele S.; Delobel, Alex (2015). Evolution of Spermophagus seed beetles (Coleoptera, Bruchinae, Amblycerini) indicates both synchronous and delayed colonizations of host plants. Molecular Phylogenetics and Evolution. April 24, 2015. http://dx.doi.org/10.1016/j.ympev.2015.04.014 http://www.sciencedirect.com/science/article/pii/S1055790315001165
  22. Harrower, Emma; Bougher, Neale; Henkel, Terry; Horak, Egon; Matheny, Patrick Brandon (2015). Long-distance dispersal and speciation of Australasian and American species of Cortinarius sect. Cortinarius. Mycologia, 14-182. April 2015. http://www.mycologia.org/content/early/2015/04/23/14-182.abstract http://dx.doi.org/10.3852/14-182
  23. Bukontaite R.; Ranarilalatiana T.; Randriamihaja, J.H.; Bergsten, J. (2015). In or Out-of-Madagascar? — Colonization Patterns for Large-Bodied Diving Beetles (Coleoptera: Dytiscidae). PLoS ONE, 10(3): e0120777. http://dx.doi.org/10.1371/journal.pone.0120777 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0120777#sec017
  24. Delicado, Diana; Machordom, Annie; Ramos, Marian A. (2015). Effects of habitat transition on the evolutionary patterns of the microgastropod genus Pseudamnicola (Mollusca, Hydrobiidae). Zoologica Scripta, 44(2). February 9, 2015. DOI: 10.1111/zsc.12104 http://onlinelibrary.wiley.com/doi/10.1111/zsc.12104/abstract
  25. de Medeiros, Maria Cláudia M.P.; Lohmann, Lúcia G. (2015). Phylogeny and biogeography of Tynanthus Miers (Bignonieae, Bignoniaceae). Molecular Phylogenetics and Evolution, 85, 32–40. April 2015. http://dx.doi.org/10.1016/j.ympev.2015.01.010 http://www.sciencedirect.com/science/article/pii/S105579031500024X
  26. Oatley, Graeme; Simmons, Robert E.; Jérôme Fuchs (2015). A molecular phylogeny of the harriers (Circus, Accipitridae) indicate the role of long distance dispersal and migration in diversification. Molecular Phylogenetics and Evolution, 85, 150–160. April 2015. http://dx.doi.org/10.1016/j.ympev.2015.01.013 http://www.sciencedirect.com/science/article/pii/S1055790315000275
  27. Vilela, Júlio Fernando; de Oliveira, João Alves; de Moraes Russo, Claudia Augusta (2015). The diversification of the genus Monodelphis and the chronology of Didelphidae (Didelphimorphia). Zoological Journal of the Linnean Society. March 5, 2015. http://dx.doi.org/10.1111/zoj.12240 http://onlinelibrary.wiley.com/doi/10.1111/zoj.12240/abstract
  28. Daniels, Savel R.; Phiri, Ethel E.; Klaus, Sebastian; Albrecht, Christian; Cumberlidge, Neil (2015). Multi-locus phylogeny of the Afrotropical freshwater crab fauna reveals historical drainage connectivity and transoceanic dispersal since the Eocene. Systematic Biology. February 3, 2015 http://dx.doi.org/10.1093/sysbio/syv011 http://sysbio.oxfordjournals.org/content/early/2015/02/03/sysbio.syv011.short
  29. Owens, Hannah L. (2015). Evolution of codfishes (Teleostei: Gadinae) in geographical and ecological space: evidence that physiological limits drove diversification of subarctic fishes. Journal of Biogeography, 42(4). February 16, 2015. http://dx.doi.org/10.1111/jbi.12483 http://onlinelibrary.wiley.com.proxy.lib.utk.edu:90/doi/10.1111/jbi.12483/abstract
  30. Acurio Armas, Andrea E. (2015). Coevolutionary analysis of the transposon Galileo in the genus Drosophila. Ph.D. thesis, Universitat Autònoma de Barcelona. Departament de Genètica i de Microbiologia. January 30, 2015. http://hdl.handle.net/10803/285742
  31. de Medeiros, Maria Cláudia Melo Pacheco (2014). Taxonomic revision, phylogeny and evolution of the ecological niche of Tynanthus Miers (Bignonieae, Bignoniaceae). Ph.D. thesis, Instituto de Biociências, São Paulo. September 23, 2014. http://www.teses.usp.br/teses/disponiveis/41/41132/tde-16012015-141753/en.php
  32. Nagy, Jenő; Tökölyi, Jácint (2014). Phylogeny, Historical Biogeography and the Evolution of Migration in Accipitrid Birds of Prey (Aves: Accipitriformes). Ornis Hungarica, 22(1). 15–35. June 2014. http://dx.doi.org/10.2478/orhu-2014-0008 http://www.degruyter.com/view/j/orhu.2014.22.issue-1/orhu-2014-0008/orhu-2014-0008.xml
  33. Wood, H.M.; Gillespie, R.G. Griswold, C.E.; Wainwright, P.C. (2014). "Why is Madagascar special? The extraordinarily slow evolution of pelican spiders (Araneae, Archaeidae). Evolution, 69(2), 462-481. http://onlinelibrary.wiley.com/doi/10.1111/evo.12578/abstract http://dx.doi.org/10.1111/evo.12578
  34. Willis, C.G.; Davis, C.C.; Xi, Z. and Franzone, B. (2014). "Community assembly meets biogeography: Malpighiaceae and the origin of seasonally dry tropical forest of Mexico." Frontiers in Genetics 5, 433. http://journal.frontiersin.org/Journal/10.3389/fgene.2014.00433/abstract http://dx.doi.org/10.3389/fgene.2014.00433
  35. Alfaro; Jessica W. L.; J. P. Boubli; F. P. Paim; C. C. Ribas; M. Nazareth; M. Messias; F. Röhe; M. P. Mercês; J. d. S. e Silva; C. R. Silva; G. M. Pinho; G. Koshkarian; M. T. T. Nguyen; M. L. Harada; R. M. Rabelo; H. L. Queiroz; M. E. Alfaro and I. Farias (2014). "Biogeography of squirrel monkeys (genus Saimiri): South-central Amazon origin and rapid pan-Amazonian diversification of a lowland primate." Molecular Phylogenetics and Evolution. http://www.sciencedirect.com/science/article/pii/S1055790314003169 http://dx.doi.org/10.1016/j.ympev.2014.09.004
  36. Goodman, Kari Roesch; Evenhuis, Neal L.; Bartošová-Sojková, Pavla;, O’Grady, Patrick M. (2014). Diversification in Hawaiian long-legged flies (Diptera: Dolichopodidae: Campsicnemus): Biogeographic isolation and ecological adaptation. Molecular Phylogenetics and Evolution. Available online 16 September 2014. http://www.sciencedirect.com/science/article/pii/S1055790314002589 http://dx.doi.org/10.1016/j.ympev.2014.07.015
  37. Praz, Christophe J.; Packer, Laurence (2014). Phylogenetic position of the bee genera Ancyla and Tarsalia (Hymenoptera: Apidae): A remarkable base compositional bias and an early Paleogene geodispersal from North America to the Old World. Molecular Phylogenetics and Evolution. http://www.sciencedirect.com/science/article/pii/S1055790314003157 http://dx.doi.org/10.1016/j.ympev.2014.09.003
  38. Matos-Maraví, Pável; Águila, Rayner Núñez; Peña, Carlos; Miller, Jacqueline Y.; Sourakov, Andrei; Wahlberg, Niklas (2014). "Causes of endemic radiation in the Caribbean: evidence from the historical biogeography and diversification of the butterfly genus Calisto (Nymphalidae: Satyrinae: Satyrini)." BMC Evolutionary Biology 2014, 14:199. http://www.biomedcentral.com/1471-2148/14/199/abstract http://dx.doi.org/10.1186/s12862-014-0199-7
  39. Sorenson, L.; Allen, G.; Erdmann, M.; Dai, C.-F.; Liu, S.-Y. (2014). Pleistocene diversification of the Pomacentrus coelestis species complex (Pisces: Pomacentridae): historical biogeography and species boundaries. Marine Biology, 1-13. Available online August 24, 2014. http://dx.doi.org/10.1007/s00227-014-2521-8
  40. Matzke, N.J. (2014). "Model Selection in Historical Biogeography Reveals that Founder-event Speciation is a Crucial Process in Island Clades." Systematic Biology. Available online August 14, 2014. http://dx.doi.org/10.1093/sysbio/syu056 http://sysbio.oxfordjournals.org/content/early/2014/09/21/sysbio.syu056.full — Supplementary data on Dryad: http://datadryad.org/resource/doi:10.5061/dryad.2mc1t
  41. Litsios, G.; Pearman, P. B.; Lanterbecq, D.; Tolou, N.; Salamin, N. (2014). "The radiation of the clownfishes has two geographical replicates." Journal of Biogeography. Available online 17 July 2014. http://dx.doi.org/10.1111/jbi.12370 http://onlinelibrary.wiley.com/doi/10.1111/jbi.12370/abstract
  42. Batalha-Filhoa, Henrique; Pessoa, Rodrigo O.; Fabre, Pierre-Henri; Fjelds, Jon; Irestedt, Martin; Ericson, Per G.P. ; Silveira, Luís F.; Miyaki, Cristina Y. (2014). "Phylogeny and historical biogeography of gnateaters (Passeriformes, Conopophagidae) in the South America forests." Molecular Phylogenetics and Evolution. Available online 5 July 2014. http://dx.doi.org/10.1016/j.ympev.2014.06.025 http://www.sciencedirect.com/science/article/pii/S1055790314002383
  43. Pyron, R. Alexander (2014). "Biogeographic Analysis Reveals Ancient Continental Vicariance and Recent Oceanic Dispersal in Amphibians." Systematic Biology, Available online June 19, 2014. http://dx.doi.org/10.1093/sysbio/syu042 http://sysbio.oxfordjournals.org/content/early/2014/06/19/sysbio.syu042.abstract
  44. Palma, R. Eduardo; Boric-Bargetto, Dusan; Jayat, J. Pablo; Flores, David A.; Zeballos, Horacio; Pacheco, Víctor; Cancino, Ricardo A.; Alfaro, Fernando D.; Rodríguez-Serrano, Enrique; Pardiñas, Ulyses F. J. (2014). "Molecular phylogenetics of mouse opossums: new findings on the phylogeny of Thylamys (Didelphimorphia, Didelphidae)." Zoological Scripta, 43(3), 217-234. May 2014. http://dx.doi.org/10.1111/zsc.12051 http://onlinelibrary.wiley.com/doi/10.1111/zsc.12051/full
  45. Buckner, Janet C.; Alfaro, Jessica Lynch; Rylands, Anthony B.; Alfaro, Michael E. (2014). "Biogeography of the marmosets and tamarins (Callitrichidae). Molecular Phylogenetics and Evolution, Available online 20 May 2014. http://dx.doi.org/10.1016/j.ympev.2014.04.031 http://www.sciencedirect.com/science/article/pii/S1055790314001596
  46. Voelker, G.; Peñalba, J.V.; Huntley, J.W.; Bowie, R.C.K. (2014). "Diversification in an Afro-Asian songbird clade (Erythropygia–Copsychus) reveals founder-event speciation via trans-oceanic dispersals and a southern to northern colonization pattern in Africa." Molecular Phylogenetics and Evolution, 73, 97–105. http://dx.doi.org/10.1016/j.ympev.2014.01.024 http://www.sciencedirect.com/science/article/pii/S1055790314000372
  47. Harris, Rebecca B.; Birks, S.M.; Leaché, A.D. (2014). "Incubator birds: biogeographical origins and evolution of underground nesting in megapodes (Galliformes: Megapodiidae)." Journal of Biogeography, http://dx.doi.org/10.1111/jbi.12357 http://onlinelibrary.wiley.com/doi/10.1111/jbi.12357/full

Other citations of BioGeoBEARS

(link to this section)

  1. Sanmartin, Isabel (2015). Probabilistic models in Biogeography. Biogeografia da América do Sul: Analisando espaço, tempo, e forma, 2nd Edition. Publisher: Editorial Roca (Grupo Editorial Nacional), Editors: Claudio J. B. de Carvalho & Eduardo A. B. Almeida, 1-22. January 2015.
  2. Holzmeyer L, Duretto M, Crayn D, Hörandl E, Heslewood M, et al. (2015) Phylogeny of Acronychia (Rutaceae) and First Insights into Its Historical Biogeography and the Evolution of Fruit Characters. PLoS ONE 10(8): e0136296. http://dx.doi.org/10.1371/journal.pone.0136296 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136296
  3. Sessa, Emily B.; Li-Bing Zhang, Henry Väre, and Aino Juslén (2015). What We Do (and Don't) Know about Ferns: Dryopteris (Dryopteridaceae) as a Case Study, Systematic Botany, 40(2), 387-399. http://www.bioone.org/doi/abs/10.1600/036364415X688844 http://dx.doi.org/10.1600/036364415X688844
  4. Pisa, S.; Vanderpoorten, A. ; Patiño, J.; Werner, O.; González-Mancebo, J. M.; Ros, R. M. (2015). How to define nativeness in vagile organisms: lessons from the cosmopolitan moss Bryum argenteum on the island of Tenerife (Canary Islands). Plant Biology, 17(3), http://dx.doi.org/10.1111/plb.12348
  5. Villarreal, Juan Carlos; Cusimano, Natalie; Renner, Susanne S. (2015). Biogeography and diversification rates in hornworts: The limitations of diversification modeling. Taxon, 2, 229-238. May 6, 2015. http://www.ingentaconnect.com/content/iapt/tax/2015/00000064/00000002/art00005 http://dx.doi.org/10.12705/642.7
  6. Yu, Yan; Harris, A.J.; Blair, Christopher; He, Xingjin; (2015). RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography. Molecular Phylogenetics and Evolution, 87, 46-49. June 2015. http://dx.doi.org/10.1016/j.ympev.2015.03.008 http://www.sciencedirect.com/science/article/pii/S1055790315000652
  7. Mendoza, Ángela María; Ospina, Oscar E.; Cárdenas-Henao, Heiber; García-R, Juan C. (2015). A likelihood inference of historical biogeography in the world’s most diverse terrestrial vertebrate genus: Diversification of direct-developing frogs (Craugastoridae: Pristimantis) across the Neotropics. Molecular Phylogenetics and Evolution, 85, 50–58. April 2015. http://www.sciencedirect.com/science/article/pii/S1055790315000299 http://dx.doi.org/10.1016/j.ympev.2015.02.001
  8. Stelbrink, Björn (2015). A biogeographic view on Southeast Asia's history. Ph.D. thesis, Humboldt University of Berlin, Faculty of Life Sciences, published on 06.01.2015, urn: nbn: de: kobv: 11-100225314 http://edoc.hu-berlin.de/docviews/abstract.php?id=41333
  9. Lohman, D. J.; Tsang, S. M. (2014). A manifesto of panbiogeography, Australasian edition. Frontiers of Biogeography, 6(4), 191-193. https://escholarship.org/uc/item/6bf156cf
  10. Vecera, Laura-Marie (2014). Exploring the ecological and evolutionary drivers of diversification of the alpine plant genus Phyteuma (Campanulaceae). Bachelor Thesis in Environmental Sciences. Matriculation number 332 60 16. Faculty of Environment and Natural Resources, Department of Biometry and Environmental System Analysis, Freiburg. December 17, 2014. http://www.biom.uni-freiburg.de/lehre/bachelorthesis-lauravecera2.pdf
  11. Töpel, Mats; Calió, Maria Fernanda; Zizka, Alexander; Scharn, Ruud; Silvestro, Daniele; Antonelli, Alexandre (2014). SpeciesGeoCoder: Fast categorisation of species occurrences for analyses of biodiversity, biogeography, ecology and evolution. bioRxiv. September 18, 2014. http://biorxiv.org/content/early/2014/09/17/009274.short
  12. Lawing, A.M., & Matzke, N.J. (2014). Conservation paleobiology needs phylogenetic methods. Ecography. http://dx.doi.org/10.1111/ecog.00783 http://onlinelibrary.wiley.com/doi/10.1111/ecog.00783/full
  13. Catanach, Therese (2014). Biogeography and phylogenetics of grassland Auchenorrhyncha. Ph.D. thesis, School of Integrative Biology, University of Illinois at Urbana-Champaign. January 16, 2014. http://hdl.handle.net/2142/46689 https://www.ideals.illinois.edu/handle/2142/46689
  14. Matzke, Nicholas J. (2013). Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing. Frontiers of Biogeography, 5(4), 242-248. http://escholarship.org/uc/item/44j7n141
  15. Matzke, Nicholas J. (2013). Probabilistic Historical Biogeography: New models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing. Department of Integrative Biology, University of California, Berkeley. August 2013. Order No. 3616487, ProQuest Dissertations and Theses, pp. 1-240. Open-access at: http://search.proquest.com/docview/1526024556
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